Source: r-bioc-tcgabiolinks
Standards-Version: 4.7.4
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:
 Andreas Tille <tille@debian.org>,
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Build-Depends:
 debhelper-compat (= 14),
 dh-r,
 r-base-dev,
 r-cran-downloader,
 r-bioc-biomart,
 r-cran-dplyr,
 r-cran-tibble,
 r-bioc-genomicranges,
 r-cran-xml,
 r-cran-data.table,
 r-cran-jsonlite,
 r-cran-plyr,
 r-cran-knitr,
 r-cran-ggplot2,
 r-cran-stringr,
 r-bioc-iranges,
 r-cran-rvest,
 r-bioc-s4vectors,
 r-cran-r.utils,
 r-bioc-summarizedexperiment,
 r-bioc-tcgabiolinksgui.data,
 r-cran-readr,
 r-cran-tidyr,
 r-cran-purrr,
 r-cran-xml2,
 r-cran-httr,
 r-pkg-team-core-architecture,
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-tcgabiolinks
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-tcgabiolinks.git
Homepage: https://bioconductor.org/packages/TCGAbiolinks/

Package: r-bioc-tcgabiolinks
Architecture: all
Depends:
 ${R:Depends},
 ${misc:Depends},
 r-pkg-team-core-architecture,
Recommends:
 ${R:Recommends},
Suggests:
 ${R:Suggests},
Description: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
 The aim of TCGAbiolinks is : i) facilitate the GDC open-access data retrieval,
 ii) prepare the data using the appropriate pre-processing strategies, iii)
 provide the means to carry out different standard analyses and iv) to easily
 reproduce earlier research results. In more detail, the package provides
 multiple methods for analysis (e.g., differential expression analysis,
 identifying differentially methylated regions) and methods for visualization
 (e.g., survival plots, volcano plots, starburst plots) in order to easily
 develop complete analysis pipelines.
